PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000189.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 254aa    MW: 27034.2 Da    PI: 10.2441
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000189.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.91.8e-3842129288
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai+++tgt++++as+   a++ s+s++  s
  Itr_sc000189.1_g00008.1  42 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETVQWLLQQAEPAIIAATGTGTIPASALaAAAEASVSEQGTS 127
                              789******************************************************************88873333333333333 PP

                      TCP  87 sg 88 
                               +
  Itr_sc000189.1_g00008.1 128 VS 129
                              32 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3247136IPR005333Transcription factor, TCP
PROSITE profilePS5136927.79148102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAGNKPAEIK DLQILSSHNT KDQPQPQPQP QPQENNKKLQ VAPKRSSNKD RHKKVDGRGR  60
RIRMPALCAA RIFQLTRELG HKTDGETVQW LLQQAEPAII AATGTGTIPA SALAAAAEAS  120
VSEQGTSVSA SLHEFAGIRS HWAVMGGANN LSRPQISSAA AAAWPSVPGF APGFSGNQIL  180
NSIPKFGFHG FEFPNPGTFT QHLPGLELGL SQEGRIGSVN FQAVPQSYQM GTGNNPMNQQ  240
HPGTGRDESQ GPGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043907.15e-81Teosinte branched 1 isoform 1
RefseqXP_007043908.15e-81Teosinte branched 1 isoform 1
SwissprotQ9LSD55e-62TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A068UY752e-91A0A068UY75_COFCA; Uncharacterized protein
STRINGVIT_14s0068g01690.t011e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.15e-59TCP family protein